On this page, you will find answers to common chemistry- and research-related questions.
What is...
Common terms used in chemistry databases and research.
When you need to learn how to use a resource or the catalogue or improve your writing/presentation skills.
Hill Order is a system of writing chemical formulae. If the compound for which the formula is being written contains carbon, the number of carbon atoms is listed first. The number of hydrogen atoms is listed next. Every other element is listed subsequently in alphabetical order.
If the compound for which the formula is being written does not contain carbon, every element (including hydrogen) is listed in alphabetical order.
A list of chemical formulas (e.g. in an index) is compiled alphabetically according to the first element in each formula.
An example of a list:
The CAS Registry Number Database CRC Handbook of Chemistry and Physics, and the Merck Index require that Hill Order is used when searching by molecular formula.
You can also search compounds by their Reaxys Registry Numbers (also referred to as RX-RNs). But unlike CAS numbers, these numbers do not refer to biomolecules like enzymes or commercial mixtures. These numbers can be used in both Reaxys and Scifinder.
Search for your for your structure or compound based on the information you have (such as chemical name, molecular formula, etc.) in a resource that contains registry number information. Some resources to try are: SciFinder, Reaxys, the CRC Handbook of Chemistry and Physics, The Merck Index, ChemSpider, Sittig's Handbook of Toxic and Hazardous Chemicals and Carcinogens, the CAS Index Guide, or the Sigma-Aldrich Corporation website.
A registry number (sometimes seen as RN) is a unique identifying number assigned to a chemical compound, commercial mixture, or an entire class of molecules (e.g. categories of enzymes). A CAS registry number is one assigned by the Chemical Abstracts Service (CAS) once a substance is registered with them. CAS registry numbers are assigned to structures rather than names, and look something like this: 15687-27-1 or 71-43-2.
Note: isomers that have the same molecular formula will each have their own CAS numbers.
|
Resource |
How to search by CAS Registry Number |
|
Type into search bar |
|
|
“Explore Substances” > “Substance Identifier” tab |
|
|
“Document Search” > select “CAS Number” from dropdown list |
|
|
“Query” > “Refine Query” |
|
|
“Structure/Property Search” button |
|
|
Under “Basic Search” tab |
|
|
“Substance & Properties” tab > “Substance Data” > “Identification Data” |
DOI stands for digital object identifier. A DOI looks something like this: 10.1021/ja100167z. They are typically found as part of the citation information for journal articles published in the sciences. DOIs may also be used for electronic books or book chapters. A DOI uniquely identifies a publication – no two publications will have the same DOI, and one publication in multiple databases will always have the same DOI. When you search using a DOI, that particular article will always be the result. This is helpful because it saves you from having to remember the journal title, article title, volume numbers and so forth!
A DOI can be found anywhere in a journal article – under the author information or the article title, or at the top or bottom of the first page. DOIs can also be found in database search results, or by clicking on the detailed record for the article you are interested in.
Some articles may not have a DOI. For example, articles published outside of the sciences tend not to have DOIs. An article may also not have a DOI if it was published before DOIs existed (though some older articles will have had DOIs added!). DOIs are becoming more common in the scientific community, so recently published articles tend to have a DOI assigned to them.
DOIs can be used to locate an article in particular databases like SciFinder, Reaxys, Web of Science and SCOPUS.
DOIs can also be searched through Google.
Find the full text of an article using the DOI
The purpose of a DOI is to give a distinct alpha-numeric name to an article to allow that article to be uniquely identified without using potentially ambiguous search methods such as journal titles or abbreviations, names of authors, or article titles.
Because of this, you can use a DOI to check if we have electronic access to the full text for a specific article by using the Article Finder. Article Finder can be accessed through the UTL homepage – it is located below the catalogue search bar on the right. On the Article Finder screen, there is an option to search specifically by a DOI. Plug the DOI into the box and click search – you do not need to provide any information other than the DOI! This brings up a page that allows you to select the provider you wish to access the full text through.
Create a permanent link using a DOI
DOIs can also be used to create a permanent link to the article. This is helpful if you want to share the article with someone, or can be used as an easy way to bring up an article in the future. Building a permanent link using a DOI can be done through either of the following methods:
Using Article Finder:
This link will take you the page that displays the providers for your article.
Building your own link:
This link will take you directly to your article - you will not have a choice of providers (if you are off campus it will ask for your UTORid and password first).
An InChI is a string of characters used to uniquely identify chemical substances. This system was developed by IUPAC to make searching for molecular information online easier. The InChI has been further condensed into a shorter string called an InChIKey. The InChIKey remains a unique identifier, and can be searched in some database. An InChiKey can also be plugged into internet search engines such as Google to retrieve information about a particular substance from internet sources. An InChIKey will look something like this: WPYMKLBDIGXBTP-UHFFFAOYAD
Notice the difference between an InChI and an InChIKey:
Image from ChemSpider
Further Information:
RSS stands for Really Simple Syndication. RSS allows you to pull information from different websites and put it on one page. RSS feeds are “feeds” because as websites are updated the new information is “fed” onto your page providing the most current information from a source you are interested in. RSS feeds give the user quick access to up-to-date information about recent publications and news.
In order to create a RSS feed you need to set-up a “reader”. Readers can be found in email accounts such as gmail and yahoo, on your computer, or on your browser, for example Firefox or Internet Explorer. Readers are also known as aggregators as they aggregate information from multiple sources.
To get started you have to download an RSS Reader or familiarize yourself with the one on your computer. The next step is to find a website on your topic/interest with an RSS feed, usually indicated by an orange “add feed” button.
Many sites will also allow you to add a RSS feed by clicking on the button and then indicating the reader you have.
Some examples:
Angewandte Chemie International Edition’s RSS feed
http://onlinelibrary.wiley.com/rss/journal/10.1002/(ISSN)1521-3773
Journal of the American Chemical Society: Latest Articles (ACS Publications) RSS feed
http://feeds.feedburner.com/acs/jacsat
Example of database RSS feed:
Reaxys RSS feed
Email alerts are different than RSS feeds. With alerts, you will receive notification of new information directly to your email account. With RSS feeds, you will have to check your reader or aggregator. Alerts also offer you the ability to customize the information you wish to receive instead of just seeing the most recently published information. By subscribing to email alerts you can receive an email when information on a topic or subject that interests you becomes available.
Many databases and publishers now offer a variety of email alerts to choose from. For example, content alerts notify you when a new issue of a journal(s) is published from either a selected journal or a database. Search alerts email you when newly published information related to one of your saved searches is added. This can include when an article you are interested in is cited or when an author you are following publishes a new article.
Whereas RSS feeds are constantly being updated as new information becomes available, email alerts are only sent when specific information is produced. The frequency of which you will receive alerts will depend on the type of information that is being requested (i.e. journals issued on a monthly or a bimonthly basis), or on the frequency preference you set for your alerts (i.e. weekly, daily, whenever something new is published).
Scopus:
“customizing” explains how to set-up different RSS feeds and alerts
Create email alerts for an affiliation
Web of Science:
About alerts and RSS feeds
Citation alerts
Saved search alerts
SciFinder:
Set up a "Keep me posted" alert
Reaxys:
"Alerting"
Help with doing research or using the catalogue and resources?
Help with creating cool posters or displays?
Help to Improve my scientific writing abilities
Twitter
YouTube
Instagram